bioarch package¶
Submodules¶
bioarch.age module¶
bioarch.individual module¶
-
class
bioarch.individual.
AgeSexStature
(osteological_sex: bioarch.individual.OsteologicalSex, age: bioarch.age.EstimatedAge, femur: bioarch.individual.LongBoneMeasurement, humerus: bioarch.individual.LongBoneMeasurement, tibia: bioarch.individual.LongBoneMeasurement, stature: Optional[str], body_mass: Optional[str])[source]¶ Bases:
object
docstring for AgeSexStature
-
age
¶
-
body_mass
¶
-
femur
¶
-
humerus
¶
-
osteological_sex
¶
-
stature
¶
-
tibia
¶
-
-
class
bioarch.individual.
BurialInfo
(site_name: str, site_id: str)[source]¶ Bases:
object
docstring for BurialInfo
-
class
bioarch.individual.
Individual
(_id: str, site: bioarch.individual.BurialInfo, age_sex_stature: bioarch.individual.AgeSexStature, mouth: bioarch.mouth.Mouth, occupational_markers: bioarch.occupational_markers.OccupationalMarkers, joints: bioarch.joints.Joints, trauma: bioarch.trauma.Trauma, context: bioarch.context.Context)[source]¶ Bases:
object
docstring for Individual
bioarch.left_right module¶
bioarch.mouth module¶
-
class
bioarch.mouth.
Mouth
(teeth: List[bioarch.mouth.Tooth])[source]¶ Bases:
object
Object to hold the 32 teeth
bioarch.occupational_markers module¶
-
class
bioarch.occupational_markers.
EnthesialMarker
(value: Union[int, float], is_s: bool = False, is_oe: bool = False)[source]¶ Bases:
object
docstring for EnthesialMarker
-
class
bioarch.occupational_markers.
OccupationalMarkers
(c_trapezius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_o_deltiod: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_o_pectoralis_major: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_costoclaviclar_lig: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_subcalvius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_conoid_lig: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_trapezoid_lig: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], s_pectoralis_minor: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], s_levator_scapulae: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], s_triceps_long_head: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], s_trapezius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_subscapularis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_teres_major: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_latissimus_dorsi: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_pectoralis_major: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_deltoid: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_coracobrachialis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_supraspinatus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_infraspinatus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_teres_minor: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_o_extensor: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_o_flexor: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_brachialis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_o_pronator_quadrataus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_triceps_brachii: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_anconeus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_o_supinator: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_biceps_brachii: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_supinator: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_pronator_teres: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_pronator_quadratus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_brachoradialis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_gluteus_minimus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_gluteus_medius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_piriformus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_obturator_internus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_obturator_externus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_quadratis_femoris: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_ilioposas: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_gluteus_maximus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_pectineus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_vastus_medialis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_vastus_lateralis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_adductor_magnus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_gastrocnemius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_plantaris: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_popliteus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_tensor_fascia_latae: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_quadriceps: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_sartorius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_gracilis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_semitendinosus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_o_tibialus_anterior: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_biceps_femoris: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_semimembranosus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_popliteus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_o_soleus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_o_tibialis_posterior: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_o_flexor_digitorium: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_biceps_femoris: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_extensor_muscles: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_flexor_muscles: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_peroneus_longus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_peronus_brevis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_soleus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], p_quadriceps: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_achilles: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker])[source]¶ Bases:
object
docstring for OccupationalMarkers
bioarch.sex module¶
Module contents¶
-
class
bioarch.
AgeCategory
[source]¶ Bases:
enum.Enum
An enumeration.
-
ADULT
= 6¶
-
MIDDLE
= 3¶
-
MIDDLE_OLD
= 4¶
-
OLD
= 5¶
-
UNKNOWN
= 0¶
-
YOUNG
= 1¶
-
YOUNG_ADULT
= 2¶
-
-
class
bioarch.
EstimatedAge
(category: str, ranged: Optional[str])[source]¶ Bases:
object
docstring for EstimatedAge
-
MAX_AGE
= 100¶
-
-
class
bioarch.
BodyPosition
[source]¶ Bases:
enum.Enum
An enumeration.
-
CROUCHED
= 2¶
-
CROUCHED_LEFT_SIDE
= 3¶
-
CROUCHED_RIGHT_SIDE
= 4¶
-
STOMACH
= 5¶
-
SUPINE
= 0¶
-
SUPINE_FLEXED_LEGS
= 1¶
-
-
class
bioarch.
CompassBearing
[source]¶ Bases:
enum.Enum
An enumeration.
-
EAST
= 2¶
-
NORTH
= 0¶
-
NORTH_EAST
= 1¶
-
NORTH_WEST
= 7¶
-
SOUTH
= 4¶
-
SOUTH_EAST
= 3¶
-
SOUTH_WEST
= 5¶
-
WEST
= 6¶
-
-
class
bioarch.
Context
(body_position: Optional[bioarch.context.BodyPosition], body_orientation: Optional[bioarch.context.CompassBearing], disturbed: Optional[bioarch.context.Present], decapitation: Optional[bioarch.context.Present], double_grave: Optional[bioarch.context.Present], stone_layer: Optional[bioarch.context.Present], grave_goods: Dict[str, Optional[Any]])[source]¶ Bases:
object
docstring for Context
-
class
bioarch.
AgeSexStature
(osteological_sex: bioarch.individual.OsteologicalSex, age: bioarch.age.EstimatedAge, femur: bioarch.individual.LongBoneMeasurement, humerus: bioarch.individual.LongBoneMeasurement, tibia: bioarch.individual.LongBoneMeasurement, stature: Optional[str], body_mass: Optional[str])[source]¶ Bases:
object
docstring for AgeSexStature
-
age
¶
-
body_mass
¶
-
femur
¶
-
humerus
¶
-
osteological_sex
¶
-
stature
¶
-
tibia
¶
-
-
class
bioarch.
BurialInfo
(site_name: str, site_id: str)[source]¶ Bases:
object
docstring for BurialInfo
-
class
bioarch.
Individual
(_id: str, site: bioarch.individual.BurialInfo, age_sex_stature: bioarch.individual.AgeSexStature, mouth: bioarch.mouth.Mouth, occupational_markers: bioarch.occupational_markers.OccupationalMarkers, joints: bioarch.joints.Joints, trauma: bioarch.trauma.Trauma, context: bioarch.context.Context)[source]¶ Bases:
object
docstring for Individual
-
class
bioarch.
LongBoneMeasurement
(_max: Optional[float], bi: Optional[float], head: Optional[float], distal: Optional[float])[source]¶ Bases:
object
docstring for LongBoneMeasurement
-
class
bioarch.
OsteologicalSex
(pelvic: Optional[bioarch.sex.Sex], cranium: Optional[bioarch.sex.Sex], combined: Optional[bioarch.sex.Sex])[source]¶ Bases:
object
docstring for OsteologicalSex
-
class
bioarch.
JointCondition
[source]¶ Bases:
enum.Enum
1 - slight/mild 2 - medium 3 - extreme 4 - fused 5 - SCHMORL NODES 6 - FRACTURE
-
EXTREME
= 3¶
-
FRACTURE
= 6¶
-
FUSED
= 4¶
-
MEDIUM
= 2¶
-
MILD
= 1¶
-
NORMAL
= 0¶
-
SCHMORL_NODES
= 5¶
-
-
class
bioarch.
Joints
(shoulder: bioarch.left_right.LeftRight[bioarch.joints.JointCondition][bioarch.joints.JointCondition], elbow: bioarch.left_right.LeftRight[bioarch.joints.JointCondition][bioarch.joints.JointCondition], wrist: bioarch.left_right.LeftRight[bioarch.joints.JointCondition][bioarch.joints.JointCondition], hip: bioarch.left_right.LeftRight[bioarch.joints.JointCondition][bioarch.joints.JointCondition], knee: bioarch.left_right.LeftRight[bioarch.joints.JointCondition][bioarch.joints.JointCondition], ankle: bioarch.left_right.LeftRight[bioarch.joints.JointCondition][bioarch.joints.JointCondition], sacro_illiac: bioarch.joints.JointCondition, c1_3: bioarch.joints.JointCondition, c4_7: bioarch.joints.JointCondition, t1_4: bioarch.joints.JointCondition, t5_8: bioarch.joints.JointCondition, t9_12: bioarch.joints.JointCondition, l1_5: bioarch.joints.JointCondition)[source]¶ Bases:
object
docstring for Joints
-
class
bioarch.
EnthesialMarker
(value: Union[int, float], is_s: bool = False, is_oe: bool = False)[source]¶ Bases:
object
docstring for EnthesialMarker
-
class
bioarch.
OccupationalMarkers
(c_trapezius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_o_deltiod: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_o_pectoralis_major: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_costoclaviclar_lig: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_subcalvius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_conoid_lig: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_trapezoid_lig: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], s_pectoralis_minor: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], s_levator_scapulae: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], s_triceps_long_head: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], s_trapezius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_subscapularis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_teres_major: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_latissimus_dorsi: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_pectoralis_major: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_deltoid: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_coracobrachialis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_supraspinatus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_infraspinatus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_teres_minor: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_o_extensor: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], h_o_flexor: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_brachialis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_o_pronator_quadrataus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_triceps_brachii: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_anconeus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], u_o_supinator: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_biceps_brachii: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_supinator: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_pronator_teres: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_pronator_quadratus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], r_brachoradialis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_gluteus_minimus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_gluteus_medius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_piriformus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_obturator_internus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_obturator_externus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_quadratis_femoris: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_ilioposas: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_gluteus_maximus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_pectineus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_vastus_medialis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_vastus_lateralis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_adductor_magnus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_gastrocnemius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_plantaris: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_popliteus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_tensor_fascia_latae: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_quadriceps: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_sartorius: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_gracilis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_semitendinosus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_o_tibialus_anterior: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_biceps_femoris: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_semimembranosus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_popliteus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_o_soleus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_o_tibialis_posterior: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], t_o_flexor_digitorium: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_biceps_femoris: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_extensor_muscles: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_flexor_muscles: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_peroneus_longus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_peronus_brevis: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], f_o_soleus: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], p_quadriceps: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker], c_achilles: bioarch.left_right.LeftRight[bioarch.occupational_markers.EnthesialMarker][bioarch.occupational_markers.EnthesialMarker])[source]¶ Bases:
object
docstring for OccupationalMarkers
-
class
bioarch.
LeftRight
(left: Optional[T], right: Optional[T])[source]¶ Bases:
typing.Generic
Wrapper around measurements taken on both the left and right sides. This augments the two measurements by adding a meta-measurement with the “avg”/”best” combination of both.
-
left
¶
-
right
¶
-
-
class
bioarch.
Mouth
(teeth: List[bioarch.mouth.Tooth])[source]¶ Bases:
object
Object to hold the 32 teeth
-
class
bioarch.
Tooth
[source]¶ Bases:
object
docstring for Tooth
-
abcess
¶ ‘NA’, ‘0’, ‘1’
-
calculus
¶ ‘NA’, ‘0’, ‘1’, ‘2’, ‘3’
-
cavities
¶ ‘NA’, ‘0’, ‘1’
-
eh
¶ ‘NA’, ‘0’, ‘1’
-
tooth
¶ ‘NA’, ‘0’, ‘1’, ‘A’, ‘B1’, ‘B2’, ‘C’, ‘D’, ‘E’, ‘F’, ‘G’, ‘H’, ‘I’
-
-
class
bioarch.
Sex
[source]¶ Bases:
enum.Enum
An enumeration.
-
FEMALE
= 0¶
-
FEMALE_ASSUMED
= 20¶
-
FEMALE_LIKELY
= 10¶
-
MALE
= 100¶
-
MALE_ASSUMED
= 80¶
-
MALE_LIKELY
= 90¶
-
UNKNOWN
= 50¶
-
-
class
bioarch.
Trauma
(facial_bones: bioarch.trauma.TraumaCategory, clavicle: bioarch.left_right.LeftRight[bioarch.trauma.TraumaCategory][bioarch.trauma.TraumaCategory], scapula: bioarch.left_right.LeftRight[bioarch.trauma.TraumaCategory][bioarch.trauma.TraumaCategory], humerus: bioarch.left_right.LeftRight[bioarch.trauma.TraumaCategory][bioarch.trauma.TraumaCategory], ulna: bioarch.left_right.LeftRight[bioarch.trauma.TraumaCategory][bioarch.trauma.TraumaCategory], radius: bioarch.left_right.LeftRight[bioarch.trauma.TraumaCategory][bioarch.trauma.TraumaCategory], femur: bioarch.left_right.LeftRight[bioarch.trauma.TraumaCategory][bioarch.trauma.TraumaCategory], tibia: bioarch.left_right.LeftRight[bioarch.trauma.TraumaCategory][bioarch.trauma.TraumaCategory], fibula: bioarch.left_right.LeftRight[bioarch.trauma.TraumaCategory][bioarch.trauma.TraumaCategory], ribs: bioarch.trauma.TraumaCategory, vertabrae: bioarch.trauma.TraumaCategory)[source]¶ Bases:
object
docstring for Trauma
-
class
bioarch.
TraumaCategory
[source]¶ Bases:
enum.Enum
An enumeration.
-
BLUNT_FORCE_TRAUMA
= 6¶
-
BONY_GROWTH
= 10¶
-
CRIBA
= 5¶
-
FRACTURE
= 3¶
-
FUSED
= 11¶
-
INFECTION
= 2¶
-
NORMAL
= 1¶
-
NOT_PRESENT
= -1¶
-
OSTEOCHONDRITIS_DESSICANS
= 12¶
-
PARTIAL_BONE
= 0.5¶
-
SHARP_FORCE_TRAUMA
= 7¶
-
TREPONATION
= 8¶
-
UNFUSED
= 9¶
-
UNHEALED_FRACTURE
= 4¶
-